v0.3.2

What's Changed

• TX7332 Default Clock set to 10MHz by @georgevigelette in #300

Full Changelog: v0.3.1...v0.3.2

v0.3.1

What's Changed

• Demote meshroom stderr to warning log level by @ebrahimebrahim in #286
• updated thermal test inputs by @peterhollender in #288
• [HOTFIX] fix trigger comms bug by @peterhollender in #291
• Serialize allowed-roles in Protocol.to_dict (#294) by @arhowe00 in #295

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• Add tabluar output from solution analysis by @peterhollender in #250
• Add user roles to individual protocols by @arhowe00 in #280
• Add API documentation and DFU update mode for Console by @georgevigelette in #287

Full Changelog: v0.2.1...v0.3.0

v0.2.1

Improvements to meshroom logging and a fix to a windows path bug

What's Changed

• Bump codecov/codecov-action from 5.4.0 to 5.4.2 in the actions group by @dependabot in #282
• Add Meshroom logging to run_reconstruction (#279) by @dlichy in #281
• Fix path issue in run_reconstruction (#283) by @dlichy in #284

Full Changelog: v0.2.0...v0.2.1

v0.2.0

This release fixes aspects of the device interface to enable high voltage, and also adds several improvements to the mesh reconstruction pipeline:

• background removal
• new pipeline options
• input image resizing

It also contains a breaking change that moves openlifu.photoscan and related items into a subpackage openlifu.nav.

What's Changed

• Enable High Voltage by @georgevigelette in #276
• Add background remove, resizing, and additional pipelines (#277, #271, #267) by @dlichy in #278

Full Changelog: v0.1.0...v0.2.0

v0.1.0

First release of the openlifu python library to support the OpenLIFU application

What's Changed

• P/organize by @peterhollender in #1
• P/registers by @peterhollender in #2
• standardize use of the "profile" keyword by @peterhollender in #3
• P/organize by @peterhollender in #4
• Reorganize to prep for applying scientific-python cookie by @ebrahimebrahim in #16
• Apply scientific-python cookie by @ebrahimebrahim in #17
• Bump codecov/codecov-action from 4.3.0 to 4.5.0 in the actions group by @dependabot in #18
• Switch to master branch of k-wave-python by @ebrahimebrahim in #20
• P/fix kwave if by @peterhollender in #21
• Relax python version requirement to 3.9 by @ebrahimebrahim in #23
• Convert notebooks to jupytext by @ebrahimebrahim in #53
• Make k-wave-python a direct dependency by @ebrahimebrahim in #78
• Fix gitignore of ipynb files by @ebrahimebrahim in #83
• Improvements to Database by @ebrahimebrahim in #81
• Support serialization for Protocols and Transducers (#85) by @ebrahimebrahim in #86
• Fix subject creation (#90) by @ebrahimebrahim in #101
• Add to/from json for Points by @ebrahimebrahim in #99
• Fix vtk warning when loading a transducer model by @medmssaouri in #112
• Replace warning messages with info level for overwrites in database by @medmssaouri in #113
• Rename 'add_' functions to 'write_' in database class by @medmssaouri in #115
• Update data format, apply some style changes, enable adding sessions by @ebrahimebrahim in #110
• Improve install steps in the README.rst by @medmssaouri in #118
• Add protocol_id to session by @medmssaouri in #117
• Implement solution class with serialization capabilities by @ebrahimebrahim in #116
• Issue 91 by @medmssaouri in #123
• Bump codecov/codecov-action from 4.5.0 to 4.6.0 in the actions group by @dependabot in #128
• Setup DVC database tracking by @sadhana-r in #122
• Add approval information to Sessions and Solutions by @ebrahimebrahim in #130
• Fix write_volume to handle new subject directory by @sadhana-r in #133
• Add fix to create sessions directory if it doesn't exist by @sadhana-r in #138
• Add Runs #96 by @medmssaouri in #131
• Port over minimal solution analysis code from matlab by @ltetrel in #140
• Change Solution.focus to a list of foci by @ebrahimebrahim in #127
• DB create operations initialize empty component object lists by @ebrahimebrahim in #143
• Fix bug in openlifu Run class by @sadhana-r in #145
• Port over solution creation and scaling code (#126) by @ltetrel in #146
• Add json support for SolutionAnalysis (#154) by @ebrahimebrahim in #155
• Convert value to float in Solution.analyze by @ebrahimebrahim in #157
• add mannequin example, fix some database write operations by @ebrahimebrahim in #159
• Bump codecov/codecov-action from 4.6.0 to 5.0.2 in the actions group by @dependabot in #164
• Switch dirname to use Path parent by @peterhollender in #169
• Update get_angle return order by @peterhollender in #174
• Fix matrix array generation by @peterhollender in #171
• Bump codecov/codecov-action from 5.0.2 to 5.0.7 in the actions group by @dependabot in #172
• Default to using the GPU by @peterhollender in #176
• Add concept of photoscans by @sadhana-r in #178
• Fix focus masking for solution analysis by @peterhollender in #183
• Bump codecov/codecov-action from 5.0.7 to 5.1.1 in the actions group by @dependabot in #184
• README.rst: Update Dev mode install instructions by @arhowe00 in #192
• Bump codecov/codecov-action from 5.1.1 to 5.3.1 in the actions group across 1 directory by @dependabot in #195
• Add functionality to load photoscans by @sadhana-r in #186
• 161 test and fix database timestamps (#161) by @arhowe00 in #194
• Update transducer tracking definition by @sadhana-r in #188
• Pin k-wave-python 0.3.4 to avoid a bug in 0.3.5 by @ebrahimebrahim in #193
• Add to class Database and test delete_protocol by @arhowe00 in #197
• Add skin surface computation tools (#149) by @ebrahimebrahim in #190
• Added docstrings to Protocol.py by @peterhollender in #202
• Add functionality to load photoscan affiliated data from the database by @sadhana-r in #199
• Fix missing comma in db_dvc json file by @ebrahimebrahim in #208
• 203 add user table with roles by @arhowe00 in #206
• Add example users table by @arhowe00 in #210
• Update users table to use password hashes and not passwords by @arhowe00 in #215
• Fix handling of null transducer models (#218) by @ebrahimebrahim in #219
• The great merge of p/sonication_control_refactor into main by @ebrahimebrahim in #213
• Incorporate virtual fit results into Session (#179) by @ebrahimebrahim in #212
• Fix DVC merge mistake by @ebrahimebrahim in #221
• Enumerate tx7332s on set_solution by @peterhollender in #223
• Add static Database initialization function (#217) by @arhowe00 in #220
• Pack LIFUInterface status into enum (#228) by @arhowe00 in #229
• added asynchronous response capabilities to the uart by @georgevigelette in #225
• Port solution analysis functionality from matlab by @peterhollender in #207
• Bump codecov/codecov-action from 5.3.1 to 5.4.0 in the actions group by @dependabot in #226
• STYLE: Enforce import of future annotations (#106) by @ebrahimebrahim in #224
• updated scripts for new trigger format and water tank testing by @georgevigelette in #233
• Add photocollection concept to database (#234) by @arhowe00 in #235
• Port over a minimal virtual fitting approach from matlab (#147) by @ltetrel in #162
• Fix unnecessary scalars on surface mesh (#240) by @ebrahimebrahim in #243
• Update DVC solution intensity variable naming by @ebrahimebrahim in #241
• Fix solution analys...

Pre-Release

0.0.1a

interface update for turning HV  power on