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fix timepoint out of bounds access#1402

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FFroehlich merged 1 commit intodevelopfrom
fix_adjoint
Feb 3, 2021
Merged

fix timepoint out of bounds access#1402
FFroehlich merged 1 commit intodevelopfrom
fix_adjoint

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@FFroehlich FFroehlich requested a review from dweindl February 3, 2021 17:51
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codecov bot commented Feb 3, 2021

Codecov Report

Merging #1402 (9d74446) into develop (19d3a06) will increase coverage by 0.07%.
The diff coverage is 100.00%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #1402      +/-   ##
===========================================
+ Coverage    78.66%   78.74%   +0.07%     
===========================================
  Files           63       63              
  Lines        10008    10008              
===========================================
+ Hits          7873     7881       +8     
+ Misses        2135     2127       -8     
Flag Coverage Δ
cpp 75.28% <100.00%> (+0.11%) ⬆️
petab 69.48% <ø> (ø)
python 67.72% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
src/backwardproblem.cpp 63.73% <100.00%> (ø)
src/sundials_matrix_wrapper.cpp 84.25% <0.00%> (+0.42%) ⬆️
src/spline.cpp 71.57% <0.00%> (+6.31%) ⬆️

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sonarqubecloud bot commented Feb 3, 2021

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@FFroehlich FFroehlich merged commit afcb2e2 into develop Feb 3, 2021
@FFroehlich FFroehlich deleted the fix_adjoint branch February 3, 2021 19:31
@dweindl dweindl mentioned this pull request Feb 19, 2021
dweindl added a commit that referenced this pull request Feb 20, 2021
….13)

Breaking changes:
* AMICI requires Python>=3.7
* Updated package installation (PEP517/518): 
  Creating source distributions requires https://github.com/pypa/build (#1384)
  (but now handles all package building dependencies properly)

Features:
* More flexible state reinitialization (#1417)

Updated dependencies:
* Upgrade to sundials 5.7.0 (#1392)

Fixes:
* Python: account for heaviside functions in expressions (#1382)
* Python: allow loading of existing models in import_petab_problem (#1383)
* Python: Don't override user-provided compiler/linker flags (#1389)
* Python: PEtab import reinitialization fixes (#1417)
* Python: Fix PEtab observables for pysb models (#1390)
* Python: Substitute expressions in event condition expressions (#1404)
* Python: Unspecified initial states in PEtab conditions table default to SBML initial value (#1397)
* C++: Fix timepoint out of bounds access (#1402)
* C++: Fix exported CMake config (#1388)
* Fixed Dockerfile: add python3-venv (#1398, #1408)

Other:
* Slim exported swig interface (#1425)
* Updated documentation
    * Getting started tutorial (#1423)
    * List supported SBML test tags (#1428)
    * Add AMICI C++/Python/Matlab feature comparison (#1409)
    * ...
* Various minor CI improvements
* ...
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