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Fixup Dockerfile#1398

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dweindl merged 3 commits intodevelopfrom
dock
Feb 1, 2021
Merged

Fixup Dockerfile#1398
dweindl merged 3 commits intodevelopfrom
dock

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@dweindl dweindl commented Feb 1, 2021

Missed updating this one in d7392e2

Missed updating this one in d7392e2
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codecov bot commented Feb 1, 2021

Codecov Report

Merging #1398 (77d9413) into develop (b94525e) will decrease coverage by 3.31%.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #1398      +/-   ##
===========================================
- Coverage    78.67%   75.35%   -3.32%     
===========================================
  Files           63       22      -41     
  Lines         9925     3173    -6752     
===========================================
- Hits          7808     2391    -5417     
+ Misses        2117      782    -1335     
Flag Coverage Δ
cpp ?
petab 69.55% <ø> (ø)
python ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
python/amici/pandas.py 10.96% <0.00%> (-87.10%) ⬇️
python/amici/pysb_import.py 57.19% <0.00%> (-36.70%) ⬇️
python/amici/import_utils.py 69.76% <0.00%> (-30.24%) ⬇️
python/amici/numpy.py 67.16% <0.00%> (-14.93%) ⬇️
python/amici/setuptools.py 50.00% <0.00%> (-7.70%) ⬇️
python/amici/__init__.py 83.58% <0.00%> (-7.47%) ⬇️
python/amici/parameter_mapping.py 69.09% <0.00%> (-6.37%) ⬇️
python/amici/gradient_check.py 81.39% <0.00%> (-5.82%) ⬇️
python/amici/ode_export.py 87.73% <0.00%> (-5.00%) ⬇️
python/amici/sbml_import.py 93.52% <0.00%> (-2.52%) ⬇️
... and 42 more

@dweindl dweindl merged commit 161ce20 into develop Feb 1, 2021
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sonarqubecloud bot commented Feb 1, 2021

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
No Duplication information No Duplication information

@dweindl dweindl mentioned this pull request Feb 19, 2021
dweindl added a commit that referenced this pull request Feb 20, 2021
….13)

Breaking changes:
* AMICI requires Python>=3.7
* Updated package installation (PEP517/518): 
  Creating source distributions requires https://github.com/pypa/build (#1384)
  (but now handles all package building dependencies properly)

Features:
* More flexible state reinitialization (#1417)

Updated dependencies:
* Upgrade to sundials 5.7.0 (#1392)

Fixes:
* Python: account for heaviside functions in expressions (#1382)
* Python: allow loading of existing models in import_petab_problem (#1383)
* Python: Don't override user-provided compiler/linker flags (#1389)
* Python: PEtab import reinitialization fixes (#1417)
* Python: Fix PEtab observables for pysb models (#1390)
* Python: Substitute expressions in event condition expressions (#1404)
* Python: Unspecified initial states in PEtab conditions table default to SBML initial value (#1397)
* C++: Fix timepoint out of bounds access (#1402)
* C++: Fix exported CMake config (#1388)
* Fixed Dockerfile: add python3-venv (#1398, #1408)

Other:
* Slim exported swig interface (#1425)
* Updated documentation
    * Getting started tutorial (#1423)
    * List supported SBML test tags (#1428)
    * Add AMICI C++/Python/Matlab feature comparison (#1409)
    * ...
* Various minor CI improvements
* ...
@dweindl dweindl deleted the dock branch February 20, 2021 12:33
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