#
single-cell
Here are 280 public repositories matching this topic...
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scrna-seq shiny-apps single-cell shinyapps single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq seurat single-cell-omics scrna-seq-analysis single-cell-sequencing shiny-app scanpy scatac-seq anndata scrna-pipeline seurat-objects single-cell-pipeline
-
Updated
May 21, 2024 - R
R package for integrating and analyzing multiple single-cell datasets
-
Updated
Jan 15, 2025 - R
High dimensional weighted gene co-expression network analysis
-
Updated
Mar 31, 2025 - R
R toolkit for the analysis of single-cell chromatin data
-
Updated
Jan 17, 2025 - R
Table of software for the analysis of single-cell RNA-seq data.
-
Updated
Apr 8, 2025 - R
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
bioinformatics immunology t-cell-receptor tcr rep-seq single-cell ig immunoglobulin immunoinformatics tcr-repertoire ig-repertoire single-cell-analysis bcr immune-repertoire bcr-repertoire immune-repertoire-data immune-repertoire-analysis b-cell-receptor repertoire-analysis airr-analysis
-
Updated
Apr 9, 2024 - R
-
Updated
Oct 1, 2024 - R
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
-
Updated
Jul 12, 2024 - R
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
visualization ggplot2 customization scrna-seq single-cell single-cell-genomics single-cell-rna-seq seurat
-
Updated
Apr 8, 2025 - R
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
rna-seq sequencing transcriptome transcriptomics single-cell marker-genes seurat cluster-annotation cell-markers
-
Updated
May 8, 2023 - R
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
visualization gui shiny clustering gene-expression feature-extraction transcriptomics single-cell hacktoberfest dimension-reduction human-cell-atlas
-
Updated
Mar 22, 2025 - R
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
-
Updated
Sep 24, 2024 - R
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
-
Updated
Mar 28, 2024 - R
Methods for detecting doublets in single-cell sequencing data
-
Updated
Mar 20, 2025 - R
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics single-cell phylogeny single-cell-rna-seq single-cell-analysis cnv-detection spatial-transcriptomics lineage-tracing
-
Updated
Mar 19, 2025 - R
Generate high quality, publication ready visualizations for single cell transcriptomics data.
visualization ggplot2 r data-visualization rstats single-cell single-cell-genomics single-cell-rna-seq publication-quality-plots seurat
-
Updated
Feb 13, 2025 - R
R package for analyzing single-cell RNA-seq data
-
Updated
Feb 29, 2024 - R
Collection of public scRNA-Seq datasets used by our group
-
Updated
May 4, 2021 - R
Seurat meets tidyverse. The best of both worlds.
ggplot2 dplyr tidyverse pca transcripts single-cell tsne umap normalization tibble tidyr sct purrr single-cell-rna-seq seurat
-
Updated
Jul 23, 2024 - R
Improve this page
Add a description, image, and links to the single-cell topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the single-cell topic, visit your repo's landing page and select "manage topics."