CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
Statistical classifier for immune repertoires
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Comparison of Adaptive Immune Receptor Repertoires
An R package to analyze single-cell V(D)J data
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
🐶 hlabud: HLA genotype analysis in R
Highly informative TCR representation model
WES HLA Typing based on multiple alternative tools
Fast string distance computation in Python
Sequence-based prediction of peptide-TCR interactions using paired chain data
Standardise TR/MH/IG data
Accompanying Repository to TCR-TRANSLATE paper.
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
Fast simulator of BCR and TCR sequences with full ground-truth annotations: V(D)J recombination, somatic hypermutation and sequencing artifacts across 23 species. Rust core with a Python API, for training and benchmarking AIRR-seq tools.
Alignment-free graph models of TCR and BCR repertoires built from Lempel-Ziv and FlashBack string decompositions. Compute sequence generation probability (Pgen) and repertoire diversity, and generate new sequences. Python with a C core.
Bayesian inference of Activation of TCR by Mutant Antigens
Fast trie-based search for TCR sequences with Levenshtein and substitution matrix support
To associate your repository with the immunoinformatics topic, visit your repo's landing page and select "manage topics."