🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

Comparison of Adaptive Immune Receptor Repertoires

This script takes Airr Quotes and converts them to Markdown formatting to be used in note taking apps like Obsidian

🦋 immundata [R package] – A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics

LIgO is a tool for simulation of adaptive immune receptors and repertoires.

A tool that allows comparison of real and simulated AIRR datasets by providing different statistical indicators and dataset visualizations in one report.

Minimal immune repertoire analysis pipeline using Change-O data to calculate clone diversity metrics (Shannon, Simpson) and visualize B-cell clonal distributions. Built in R.

A tool for simulation of antigen-experienced adaptive immune receptor repertoire (AIRR) datasets for benchmarking of machine learning (ML) methods.

Data source tool for connecting a Galaxy instance to the immunological data bank iReceptor Plus Gateway.