🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

The Atlas of Immunoglobulin Repertoires (TheAIR)

Comparison of gene usage in immune repertoires under different biological conditions

Construction of IHGV sequences from RNA-seq

A parser for immune receptor gene data, mainly IMGT references

(Under development) Computational framework for probabilistic models of immune receptor assembling.

Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).

IgIDivA (Immunoglobulin Intraclonal Diversification Analysis) is a purpose-built tool for the analysis of the intraclonal diversification process using high-throughput sequencing data. It is written in shiny R.

Simulation of false tandem substitutions from input sequencing data

Python and R Scripts for Statistical analysis of available immunogobulin variable genes

A pipeline for preprocessing and annotation of NGS immunoglobulin repertoire data.

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.