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Question about optimal assay choice for hdWGCNA after SCT+CCA integration in Seurat v5

#361

· petemeng opened

on Mar 28, 2025

the change of MEs is not consistent with 25 hub gene scores

#360

· wangBiojin opened

on Mar 27, 2025

Question about Seurat V5 update

#357

· GloriaLiu28 opened

on Mar 11, 2025

'wgcna_modules' slot of Seurat object has no rows

#341

· dougbarrows opened

on Dec 4, 2024

Question about [my question]Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type

#334

· RGT183 opened

on Nov 15, 2024

Question about multiple spatial samples

#333

· atrostleSW opened

on Nov 14, 2024

Error in ConstructPseudobulk (argument is not a matrix) when I don't specify label_col

#327

· ddressman91 opened

on Oct 30, 2024

Question about the possibility of using external metacell asssignment

#310

· pmandros opened

on Sep 10, 2024

no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')

#296

· DLY-2021 opened

on Jul 19, 2024

MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length"

#290

· MJD-BlanckGroup opened

on Jul 9, 2024

Seeking parameter suggestions for hdwgcna

#285

· xjyenjoy81 opened

on Jun 26, 2024

`ConstructMetaspots` not compatible with Seurat's `VisiumV2` class

#278

· ppm1337 opened

on Jun 12, 2024