Single-cell analysis in Python. Scales to >100M cells.
Annotated data.
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
rapids-singlecell: GPU-accelerated framework for scRNA analysis
Single-cell perturbation analysis
muon is a multimodal omics Python framework
A guide to using a Seurat object in conjunction with RNA Velocity
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
Multimodal Data (.h5mu) implementation for Python
Bring your single-cell data to life
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
Unsupervised Deep Disentangled Representation of Single-Cell Omics
The AnnSQL package enables SQL based queries on AnnData objects.
pseudobulking on an AnnData object
.h5mu files interface for Seurat
An AnnData-based framework for integrated proteomics analysis
Muon for Julia
Search- and quantification-engine agnostic biological interpretation of proteomics data
To associate your repository with the anndata topic, visit your repo's landing page and select "manage topics."