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  1. single-cell-tutorial single-cell-tutorial Public

    Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook 1.4k 459

  2. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 777 183

  3. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 418 102

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 335 51

  5. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 348 46

  6. scib scib Public

    Benchmarking analysis of data integration tools

    Python 302 63

Repositories

Showing 10 of 212 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 232 Apache-2.0 19 46 3 Updated Nov 15, 2024
  • destiny Public

    R package for single cell and other data analysis using diffusion maps

    theislab/destiny’s past year of commit activity
    R 77 GPL-3.0 11 31 0 Updated Nov 15, 2024
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 2 0 0 0 Updated Nov 15, 2024
  • CFGen Public
    theislab/CFGen’s past year of commit activity
    Python 6 MIT 4 1 0 Updated Nov 15, 2024
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 5 Apache-2.0 1 19 4 Updated Nov 15, 2024
  • multigrate_reproducibility Public

    Reproducing results from Multigrate paper

    theislab/multigrate_reproducibility’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 14, 2024
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials’s past year of commit activity
    Jupyter Notebook 7 Apache-2.0 1 0 1 Updated Nov 13, 2024
  • theislab/pdac_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 12, 2024
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 7 BSD-3-Clause 0 0 0 Updated Nov 12, 2024
  • DRVI_reproducibility Public

    Reproducibility repository of DRVI

    theislab/DRVI_reproducibility’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 12, 2024