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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 811 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 177 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 326 55

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 170 37

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 678 107

Repositories

Showing 10 of 384 repositories
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 8 Updated Nov 19, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 4 MIT 3 0 10 Updated Nov 19, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 3 Updated Nov 19, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Nov 19, 2025
  • pic-sure-auth-microapp Public
    hms-dbmi/pic-sure-auth-microapp’s past year of commit activity
    Java 4 Apache-2.0 5 0 2 Updated Nov 19, 2025
  • LEAP Public
    hms-dbmi/LEAP’s past year of commit activity
    Python 1 0 0 0 Updated Nov 19, 2025
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Nov 19, 2025
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 18, 2025
  • tissue-map-tools Public
    hms-dbmi/tissue-map-tools’s past year of commit activity
    Python 12 BSD-3-Clause 1 1 0 Updated Nov 18, 2025
  • pic-sure-baseline-release-control Public
    hms-dbmi/pic-sure-baseline-release-control’s past year of commit activity
    0 5 0 0 Updated Nov 18, 2025
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