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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 407 80

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 110 11

  3. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 36 6

  4. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 30 6

  5. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 30 10

  6. SquiggleNet SquiggleNet Public

    Python 20 5

Repositories

Showing 10 of 29 repositories
  • libplanc Public Forked from ramkikannan/planc

    Distributed NMF/NTF Library

    welch-lab/libplanc’s past year of commit activity
    C++ 1 19 0 0 Updated Apr 5, 2025
  • RcppPlanc Public
    welch-lab/RcppPlanc’s past year of commit activity
    C++ 4 GPL-2.0 1 0 0 Updated Apr 4, 2025
  • cytosignal Public
    welch-lab/cytosignal’s past year of commit activity
    R 17 1 2 0 Updated Apr 4, 2025
  • MultiVeloVAE Public
    welch-lab/MultiVeloVAE’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Apr 2, 2025
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 1 1,234 0 0 Updated Apr 1, 2025
  • pyCytoSimplex Public

    Create simplex plot showing similarity between single-cells and terminal clusters

    welch-lab/pyCytoSimplex’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Mar 31, 2025
  • CytoSimplex Public

    Simplex plot showing similarity between single-cells and clusters

    welch-lab/CytoSimplex’s past year of commit activity
    R 4 1 1 0 Updated Mar 31, 2025
  • pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    welch-lab/pyliger’s past year of commit activity
    Jupyter Notebook 30 GPL-3.0 6 9 0 Updated Mar 5, 2025
  • TopoVelo Public
    welch-lab/TopoVelo’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    welch-lab/VeloVAE’s past year of commit activity
    Jupyter Notebook 36 BSD-3-Clause 6 7 0 Updated Feb 25, 2025

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