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computational-biology

Here are 66 public repositories matching this topic...

OATML-Markslab / ProteinGym

Official repository for the ProteinGym benchmarks

benchmark computational-biology protein protein-design protein-fitness

Updated Mar 12, 2025
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Benjamin-Lee / deep-rules

Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
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DrugBud-Suite / CADD_Vault

chemistry cheminformatics molecular-dynamics computational-biology computational-chemistry molecular-simulation compchem computational-physics drug-discovery drug-repurposing drugs chemoinformatics drug-design protein-ligand-interactions virtual-screening molecular-modeling sbvs

Updated Mar 16, 2025
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alife-data-standards / alife-data-standards

Repository to host data standards for the ALIFE community.

computational-biology open-data open-science artificial-life evolutionary-computation

Updated Apr 24, 2023
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PSST

neurorishika / PSST

A Tutorial for Parallelised Scalable Simulations in TensorFlow

python tutorial tensorflow computational-biology neuroscience computational-neuroscience differential-equations scientific-machine-learning

Updated Jul 27, 2022
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klamt-lab / autopacmen

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

bioinformatics systems-biology computational-biology metabolic-models

Updated Feb 28, 2025
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hds-sandbox / proteomics-sandbox

A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.

computational-biology data-visualization data-analysis proteomics dataset-management biomedical-research proteomics-data-analysis user-friendly-interface clinical-proteomics proteomics-software lightweight-cloning

Updated Apr 1, 2025
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SED-ML / KiSAO

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

simulation modeling systems-biology computational-biology ontology combine mathematical-modeling sed-ml

Updated Dec 2, 2024
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m-jahn / genome-scale-models

Genome scale metabolic models in SBML format

computational-biology python3 microbiology bacteria genome-scale-models sbml-models

Updated Nov 16, 2021
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Zulko / bricks_and_scissors

Blog on the computational side of synthetic biology and DNA manufacturing

blog synthetic-biology computational-biology synbio genetic-engineering

Updated Jun 9, 2023
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carpenterlab / open-science-rules

Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research

reproducible-research computational-biology open-science carpenter-lab biomedical-research

Updated Jul 25, 2019
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Rongtingting / ReadingNotes

你今天读论文了吗

computational-biology

Updated Feb 26, 2025
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jananiravi / jananiravi.github.io

My webpage | Created using Hugo blogdown + academic

webpage computational-biology blogdown hugo-academic

Updated Feb 28, 2021
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computer-aided-biotech / better-cb

A compendium of tools for (better) computational biology.

reproducible-research computational-biology manuscript hacktoberfest manubot

Updated Apr 21, 2022
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draeger-lab / SBMLsqueezer

Context-sensitive creation of kinetic equations in biochemical networks

reaction plug equation systems-biology computational-biology information-extraction reactions mathematical-modelling sbml regulatory-network biological-networks metabolic-engineering sbo andreas-zell andreas-dr-ger biochemical-networks kinetic-equations bmc-systems-biology celldesigner

Updated Mar 16, 2021
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clei2block

stasaki / clei2block

Deep-neural protein translation

bioinformatics deep-neural-networks systems-biology computational-biology proteomics transcriptomics

Updated Nov 15, 2021
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ramirezlab / ramirezlab.github.io

The Website of the Ramiréz Lab

bioinformatics cheminformatics cancer computational-biology neuroscience molecular-dynamics-simulation drug-discovery drug-design molecular-modeling membrane-proteins neurodegenerative-diseases ion-channels

Updated Mar 26, 2025
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caravagn / evoverse

The evoverse is a package to implement cancer evolution analysis on multi-sample cancer sequecing data.

data-science bioinformatics computational-biology statistical-analysis cancer-genomics cancer-evolution

Updated Feb 13, 2023
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PedroMilanezAlmeida / ezDAFi

Easy-to-use Directed Automated Filtering and Identification of cell populations in single cell data

clustering computational-biology high-dimensional-data immunology human-computer-interaction single-cell

Updated Mar 31, 2021
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colbyford / zebrafish_mecp2_expression

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

bioinformatics genetics computational-biology rnaseq transcriptomics zebrafish

Updated Mar 29, 2024
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