Democratizing on-device AI-powered DNA analysis for everyone, everywhere
Various utilities regarding Levenshtein transducers. (Java)
A project for exploring differentially active signaling paths related to proteomics datasets
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
Programming and numeric computing platform for math modeling and visualization with fully functional programming language
DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
Artificial Life Simulation of Bacteria Motion depending on DNA
Diffusion-limited aggregation (DLA) is the process whereby particles undergoing a random walk due to Brownian motion cluster together to form aggregates of such particles.
TREND platform for protein function and evolution analysis.
SINS - Simulate INdividuals in Space
Useful NGS utilities for everyday use in the form of stand-alone tool.
This is a visualized microbe evolving simulation program based on evolutionary dynamics that I developed myself.
FLiCK - Format LeveragIng Compression frameworK
Different Computations Solutions for Bioinformatics Problems from a bioinformatics course at Chalmers Institute of Technology
Computer Science Infotainment. Tribute to the Article Series in Scientific American and their german release Spektrum der Wissenschaft
My solutions to problems from Rosalind.info to understand algorithmic problems in real life bioinformatics.
HemoPI is an in silico method to predict hemolytic property of peptide. It also allows users to design better therapeutic peptide analog with desirable hemolytic potencies
PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…
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