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@draeger-lab

Dräger Lab

Data Analytics and Bioinformatics Research Group within the Institute of Computer Science of the Martin Luther University Halle-Wittenberg

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  1. EscherConverter Public

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 16 10

  2. ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 23 8

  3. SBMLme Public

    Encoding ME models in SBML

    Java 7 2

  4. refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Jupyter Notebook 11 2

  5. SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    Jupyter Notebook 5 2

Repositories

Showing 10 of 38 repositories
  • SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    Jupyter Notebook 5 GPL-3.0 2 16 (5 issues need help) 0 Updated Apr 22, 2025
  • SBSCL Public

    The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

    HTML 22 LGPL-3.0 17 18 (3 issues need help) 1 Updated Apr 18, 2025
  • refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Jupyter Notebook 11 MIT 2 22 (4 issues need help) 1 Updated Apr 17, 2025
  • R-DRUGS Public

    Rationalized Discovery of Robust antiviral targets Using Genome-scale model Systems

    Jupyter Notebook 3 MIT 0 0 0 Updated Mar 28, 2025
  • ModelEditingTools Public

    A collection of tools for working with models in SBML format

    Java 4 MIT 1 0 0 Updated Mar 28, 2025
  • SBOannotator Public

    SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

    Python 8 GPL-3.0 4 1 1 Updated Feb 28, 2025
  • ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 23 8 14 0 Updated Jan 28, 2025
  • TFpredict Public

    Identification and structural characterization of transcription factors based on supervised machine learning

    Java 7 GPL-3.0 3 1 (1 issue needs help) 0 Updated Jan 24, 2025
  • BOFdat Public Forked from jclachance/BOFdat

    Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

    Jupyter Notebook 0 7 0 0 Updated Dec 3, 2024
  • MPClient Public

    Client library for the MPServer

    Python 2 0 0 0 Updated Nov 29, 2024
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