🔬 OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field

Python toolbox for creating and validating single-cell neuronal models with active dendrites.

Collection of experimental protocols in common patch clamp formats for rapid characterisation of ion channels

Rapid characterisation of hERG channel kinetics

The Website of the Ramiréz Lab

🔬 Scripts for analyzing molecular dynamics trajectories of nanopores under the influence of an external electric field

Curated data deposit for the CardioSafe cardiac ion channel benchmark: labels, Tanimoto-controlled splits (tan70 / tan60), and supplementary artifacts for hERG, Nav1.5, Cav1.2, and IKs.

Python scripts for analysis and vizualization of protein-peptide interactions from AutoDock CrankPep docking results

All experimental data was generated at the "Cell Biology of Ion Channels" Lab at NISER, Bhubaneswar, under the guidance of Prof. Chandan Goswami.

gHH: Generalised Hodgkin–Huxley Model

thesis defense presentation

This is a simulation which emulates neurons behavior by representing local potentials in a neuron generated by interactions between neurotransmitters and ionic channels. The purpose is to connect them in order to simulate intelligent life but, for now, this is just one neuron.

VGIchan: Prediction and Classif ication of Voltage-Gated Ion Channels

Large language models for predicting ion channels modulating proteins

AbCellera — antibody discovery and development platform

Model from Asadollahi et al. Hum. Mol. Genet. 2023

#Ioneuroscience-modeling=)Repository for code and data related to ion channel modeling and analysis in neuroscience. Tools and scripts for simulating and analyzing ion channel dynamics. Software for processing electrophysiological data.