A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

Registry of containerized biosimulation tools that support a standard command-line interface

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program

Utilities for building standardized command-line interfaces for biosimulation software packages

An efficient Java™ solver implementation for SBML

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Python library to download and cache models from BioModels

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

Tutorials for BioSimulators

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Multimodal Evaluation for Sound Event Detection (SED)

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations