Prolint2 is an optimized tool for analyzing and visualizing lipid-protein interactions from molecular dynamics trajectories.

A software for membrane analysis and subtraction in cryo-EM.

The ProLint Webserver

The Website of the Ramiréz Lab

Dataset of the "Integrative Modeling of Membrane-associated Protein Assemblies" manuscript

Map the depth on a PDB file

A small Python package to set up electrostatic solvation free energy ("Born energy") calculations of an ion in a membrane protein and calculate the electrostatic free energy with APBS .

A Python package designed for analyzing the internal degrees of freedom within molecular structures, focusing particularly on membrane proteins. It conducts statistical analyses, providing deep insights into the dynamics and flexibility of molecular interactions. Ideal for finding the most flexible regions within a protein.

A software for membrane analysis and subtraction in cryo-EM.

Source code for building the EncoMPASS database

A statistical model to predict heterologous membrane protein expression in E. coli!

Membrane helix prediction with SVMs

Membrane alpha helix packing and orientation predicrtor

TooT-PLM-ionCT: A bioinformatics framework utilizing protein language models for accurate classification of ion channels and ion transporters from membrane proteins.

Documentation

uwseds-group-OPMxplore created by GitHub Classroom

A gromacs tutorial for creating a gromos54A7 simulation system of a protein in a simple membrane