alignments

Foldseek enables fast and sensitive comparisons of large structure sets.

Align Tools is just perfect Unity asset plugin to align gui object

Scalable RNA-seq analysis

⛏ HLA predictions from NGS shotgun data

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

Mini tool for arranging HTML elements along with ellipse subset shapes

🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.

STRAC (Scalable Trace Comparison) http://arxiv.org/pdf/1910.03478

Pairwise alignment of membrane protein sequences

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

ProcessM: Real-Time Intelligent Process Mining Software

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

[3DV2026] Official repository for "CAOA - Completion-Assisted Object-CAD Alignment"

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …

Genome read alignments visualizer

Showcase of parallelization technologies using sequence alignment algorithms