Search results

--chainmap option for predefined chain-to-chain mapping of query and reference

Status: Open.

#575 In steineggerlab/foldseek;

· omgol411 opened on Mar 12, 2026

Reduced hits in v9 vs v8 and AFDB50 download EOF error

Status: Open.

#574 In steineggerlab/foldseek;

· gioodm opened on Mar 10, 2026

output fasta of easy-cluster providing inconsistent sequences

Status: Open.

#569 In steineggerlab/foldseek;

· jmoojun opened on Mar 6, 2026

easy-multimersearch returns empty results for homo-oligomeric complexes with chain count mismatch

Status: Open.

#568 In steineggerlab/foldseek;

· mf-rug opened on Mar 4, 2026

Feature request: scrollable list view in HTML results for large queries

Status: Open.

#566 In steineggerlab/foldseek;

· dmoypal opened on Feb 12, 2026

How to download the BFMD database?

Status: Open.

#563 In steineggerlab/foldseek;

· A4444z opened on Feb 3, 2026

Can Foldseek set a random seed?

Status: Open.

#561 In steineggerlab/foldseek;

· ruichaomao opened on Feb 3, 2026

When using the tmalign mode via API for searching, what type of TM-Score is the obtained evalue?

Status: Open.

#560 In steineggerlab/foldseek;

· ZzqLKED opened on Feb 2, 2026

Input order changes foldseek easy-search output

Status: Open.

#559 In steineggerlab/foldseek;

· resulelgin opened on Feb 2, 2026

Error when running easy-search with --gpu 1 --cluster-search 1 on AFDB/UniProt (Singularity)

Status: Open.

#558 In steineggerlab/foldseek;

· chagas98 opened on Jan 30, 2026

TM-Score and RMSD in HTML rendering inconsistency.

Status: Open.

#556 In steineggerlab/foldseek;

· ianandersonlol opened on Jan 27, 2026

Question: all-vs-all TM-scores or fident

Status: Open.

#555 In steineggerlab/foldseek;

· nl835 opened on Jan 23, 2026