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1. slamdunk slamdunk Public

   Streamlining SLAM-seq analysis with ultra-high sensitivity

   Python 48 24

2. popitsch/splice_sim popitsch/splice_sim Public

   Splice_sim: a nucleotide-conversion enabled RNA-seq simulation and evaluation framework

   Python 2

3. versalignLib versalignLib Public

   Showcase of parallelization technologies using sequence alignment algorithms

   C++ 2

4. GenomicOps-MCP GenomicOps-MCP Public

   An MCP server for genomics, providing liftover and bedtools-like feature overlap queries via the UCSC REST API.

   Python

5. PavriLab/hicer-nf PavriLab/hicer-nf Public

   Nextflow workflow for basic HiC data processing

   HTML 4 1

6. thesis thesis Public

   Doctoral thesis

   TeX