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@PathoGenOmics-Lab

PathoGenOmics Lab

An interdisciplinary research group dedicated to unraveling the complexities of microbial pathogens and their relationships with hosts.

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  1. snpick snpick Public

    snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

    Rust 8 2

  2. get_MNV get_MNV Public

    Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads

    Rust 6 1

  3. VIPERA VIPERA Public

    A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

    Python 5

  4. mycolorsTB mycolorsTB Public

    R Color package for Mycobacterium tuberculosis complex

    R 4

  5. transcluster transcluster Public

    A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index

    Python 2

  6. misb-sysbio-training misb-sysbio-training Public

    Master on Integrative Synthetic Biology (MISB) training sessions

    Jupyter Notebook 1

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