PathoGenOmics Lab
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transcluster
transcluster PublicA Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index
Python 2
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misb-sysbio-training
misb-sysbio-training PublicMaster on Integrative Synthetic Biology (MISB) training sessions
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Repositories
- VIPERA Public
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
PathoGenOmics-Lab/VIPERA’s past year of commit activity - transcluster Public
A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index
PathoGenOmics-Lab/transcluster’s past year of commit activity - ena-spike-ntd-repdel-analysis Public
A Snakemake workflow with associated scripts used for detecting spike NTD repaired deletions in SARS-CoV-2 Omicron BA.1 lineage reads. Manuscript under review.
PathoGenOmics-Lab/ena-spike-ntd-repdel-analysis’s past year of commit activity - get_MNV Public
Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads
PathoGenOmics-Lab/get_MNV’s past year of commit activity - snpick Public
snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.
PathoGenOmics-Lab/snpick’s past year of commit activity - SARStools Public
PathoGenOmics-Lab/SARStools’s past year of commit activity
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