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1. PathoGenOmics-Lab/pathotypr PathoGenOmics-Lab/pathotypr Public

   Genome classificator using machine learning and SNP markers

   JavaScript 12 1

2. PathoGenOmics-Lab/snpick PathoGenOmics-Lab/snpick Public

   snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

   Rust 16 2

3. PathoGenOmics-Lab/get_MNV PathoGenOmics-Lab/get_MNV Public

   Turns same-codon SNVs into MNVs and computes the true amino acid change

   Rust 10 2

4. PathoGenOmics-Lab/fstic PathoGenOmics-Lab/fstic Public

   Calculates pairwise distances between samples using alelle frequencies

   Rust 9

5. PathoGenOmics-Lab/mycolorsTB PathoGenOmics-Lab/mycolorsTB Public

   R Color package for Mycobacterium tuberculosis complex

   R 7

6. PathoGenOmics-Lab/distree PathoGenOmics-Lab/distree Public

   Extracts a distance matrix from a phylogeny (parallel, low-memory)

   Rust 5