#
iqtree
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This repository contains some phylogenetic trees I have done for practical purposes.
bioinformatics evolution phylogenetics tracer molecular-biology phylogeny mrbayes beast2 evolutionary-biology iqtree raxml-ng partitionfinder2 densitree
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Apr 22, 2025
A Nextflow pipeline to generate a phylogenetic tree from SKA alignment
workflow nextflow alignment ska phylogeny fastme phylogenetic-tree nextflow-pipeline reference-free fasttree iqtree raxml-ng split-kmer rapidnj
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Dec 19, 2024 - Nextflow
This repository provides a comprehensive tutorial for phylogenetic analysis, covering data collection, sequence alignment, tree construction, and interpretation. It runs on AWS SageMaker using Jupyter notebooks and includes tools like MAFFT, Nextclade, and IQ-TREE.
python bioinformatics gcp computational-biology phylogenetic-trees phylogenetics population-genetics high-throughput-sequencing genome-assembly r-programming radseq ipyrad ddrad-seq iqtree phylogenetic-inference
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Jun 6, 2025 - Jupyter Notebook
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