nf-core
Change the repository type filter
All
Repositories list
158 repositories
ops
Public- Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
- Compare the quality of multiple genomes, along with their annotations.
configs
PublicConfig files used to define parameters specific to compute environments at different Institutionsproteinannotator
Publicdifferentialabundance
Publicsetup-nextflow
Public- Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
- A single cell transcriptomics pipeline for QC, integration and making the data presentable
variantbenchmarking
Publicgenomeassembler
Publicdemultiplex
PublicDemultiplexing pipeline for sequencing datapathogensurveillance
Public- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
methylseq
PublicMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackeltools
Publicsarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingrangeland
PublicPipeline for remotely sensed imagery. The pipeline processes satellite imagery alongside auxiliary data in multiple steps to arrive at a set of trend files related to land-cover changes.test-datasets
Publiccreatetaxdb
PublicParallelised and automated construction of metagenomic classifier databases of different toolstaxprofiler
PublicHighly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic datananoseq
Publicspatialxe
Publicdrop
Publicmethylong
Publichlatyping
Public