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Provide custom script for merging MetaPhlAn tables for better sample name handling

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#574 In nf-core/taxprofiler;

· alexhbnr opened on Jan 30, 2025

Add option for BBTools Clumpify optical deduplication

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#547 In nf-core/taxprofiler;

· funnell opened on Oct 22, 2024

Create a samplesheet for mag

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#542 In nf-core/taxprofiler;

· sofstam opened on Oct 10, 2024

Create samplesheets for differentialabundance

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#541 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Oct 10, 2024

New feature: melon - long reads profiler

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#517 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Aug 30, 2024

 ·  

1.3.0 - Crazy Corgi

Add the interactive visualisation tool GRIMER

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#516 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Aug 19, 2024

 ·  

1.5.0 - Extravagant Estrela

Have checks that if sub-parameter activate but main parameter not, error or give warning

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#513 In nf-core/taxprofiler;

· jfy133 opened on Aug 8, 2024

Add support for metacache

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#506 In nf-core/taxprofiler;

· ChillarAnand opened on Jul 5, 2024

 ·  

1.3.0 - Crazy Corgi

Add CAT/BAT/RAT for long reads

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#504 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Jun 24, 2024

Add a long read classifier: lemur

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#503 In nf-core/taxprofiler;

· LilyAnderssonLee opened on Jun 24, 2024

Add support for the sylph profiler

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#497 In nf-core/taxprofiler;

· Midnighter opened on Jun 14, 2024

 ·  

1.3.0 - Crazy Corgi

Merged tables not produced if not run with --run_profile_standardisation

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#494 In nf-core/taxprofiler;

· apalleja opened on Jun 11, 2024