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First class support for zarr input and output
enhancementNew feature or requestNew feature or requestStatus: Open.#285 In nf-core/scdownstream;Accelerate scverse/scanpy steps with rapids-singlecell
enhancementNew feature or requestNew feature or requestStatus: Open.#283 In nf-core/scdownstream;Switch to topics for fragments
enhancementNew feature or requestNew feature or requestStatus: Open.#275 In nf-core/scdownstream;Reduce containers overhead
enhancementNew feature or requestNew feature or requestStatus: Open.#267 In nf-core/scdownstream;Add support for local/custom celltypist models
enhancementNew feature or requestNew feature or requestStatus: Open.#213 In nf-core/scdownstream;Implement gene annotation
enhancementNew feature or requestNew feature or requestStatus: Open.#173 In nf-core/scdownstream;Implement batch effect quantification
enhancementNew feature or requestNew feature or requestStatus: Open.#172 In nf-core/scdownstream;Implement sample sex prediction
enhancementNew feature or requestNew feature or requestStatus: Open.#171 In nf-core/scdownstream;Add emptydrops for empty droplet detection
enhancementNew feature or requestNew feature or requestStatus: Open.#169 In nf-core/scdownstream;Add flag to prevent writing of intermediate anndata objects to the working directory
enhancementNew feature or requestNew feature or requestStatus: Open.#151 In nf-core/scdownstream;Remove duplicate execution of Cellbender
enhancementNew feature or requestNew feature or requestStatus: Open.#147 In nf-core/scdownstream;Implement gene regulatory network analyses
enhancementNew feature or requestNew feature or requestStatus: Open.#119 In nf-core/scdownstream;