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new module: hisat3n/align

new moduleAdding a new moduleAdding a new module

Status: Open.

#9673 In nf-core/modules;

· emmcauley opened on Jan 15, 2026

new module: hisat3n/build

new moduleAdding a new moduleAdding a new module

Status: Open.

#9667 In nf-core/modules;

· emmcauley opened on Jan 15, 2026

new module: samtools/quickcheck

new moduleAdding a new moduleAdding a new module

Status: Open.

#9657 In nf-core/modules;

· Krannich479 opened on Jan 15, 2026

new module: ViralConsensus

new moduleAdding a new moduleAdding a new module

Status: Open.

#9653 In nf-core/modules;

· lucaspatel opened on Jan 14, 2026

new module: MITORSAW

new moduleAdding a new moduleAdding a new module

Status: Open.

#9649 In nf-core/modules;

· eliottBo opened on Jan 14, 2026

Multiple uses of seqkit replace module fail due to output/input name conflicts

bugSomething isn't workingSomething isn't working

Status: Open.

#9647 In nf-core/modules;

· ammaraziz opened on Jan 14, 2026

seqkit replace incorrectly uses the '-i' flag

bugSomething isn't workingSomething isn't working

Status: Open.

#9646 In nf-core/modules;

· ammaraziz opened on Jan 14, 2026

cellranger multi: Fails to process singleplex flex data

bugSomething isn't workingSomething isn't working

Status: Open.

#9639 In nf-core/modules;

· tgelafr-pfzr opened on Jan 12, 2026

gatk4/markduplicates and picard/markduplicates output file extension confusion

bugSomething isn't workingSomething isn't working

Status: Open.

#9623 In nf-core/modules;

· pmoris opened on Jan 7, 2026

new module: gapseq

new moduleAdding a new moduleAdding a new module

Status: Open.

#9619 In nf-core/modules;

· brovolia opened on Jan 7, 2026

new module: hifitrimmer/filterbam

new moduleAdding a new moduleAdding a new module

Status: Open.

#9617 In nf-core/modules;

· sainsachiko opened on Jan 6, 2026

new module: hifitrimmer/processblast

new moduleAdding a new moduleAdding a new module

Status: Open.

#9616 In nf-core/modules;

· sainsachiko opened on Jan 6, 2026