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Pull requests: nf-core/modules

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Pull requests list

Update smncopynumbercaller, ucsc/wigtobigwig, spring, and tiddit to use topic versions Ready for Review
#9977 opened Feb 11, 2026 by ramprasadn Loading…
17 tasks
update svanalysis to topic channels
#9975 opened Feb 11, 2026 by kubranarci Loading…
17 tasks
feat: Add quant_tximport_summarizedexperiment subworkflow size/xl
#9974 opened Feb 11, 2026 by pinin4fjords Loading…
3 tasks
feat(freebayes): update to topic versions
#9973 opened Feb 11, 2026 by prototaxites Loading…
3 of 17 tasks
Module to build local snpEff database
#9967 opened Feb 11, 2026 by pmoris Loading…
6 of 17 tasks
FASTQC: multiqc_files topic
#9964 opened Feb 10, 2026 by maxulysse Loading…
17 tasks
21
Telescope
#9948 opened Feb 9, 2026 by hanalysis Loading…
9 tasks done
1
7
Change output directory and file names for bwa index
#9947 opened Feb 9, 2026 by pmoris Loading…
12 of 17 tasks
4
Paraphase zips output vcf/vcf-index files only when these are created
#9929 opened Feb 8, 2026 by bagnacan Loading…
3 tasks done
ci: add Graphite CI Optimizer size/s
#9911 opened Feb 5, 2026 by edmundmiller Loading…
@edmundmiller
2
Update bcl_demultiplex size/m
#9883 opened Feb 4, 2026 by matthdsm Loading…
17 tasks
Add rgi/bwt
#9873 opened Feb 3, 2026 by vinisalazar Loading…
17 tasks done
7
Add fastqscreen aligner option
#9854 opened Feb 3, 2026 by pmoris Loading…
5 of 17 tasks
2
Fix meta_fb never defined in CELLRANGER_MULTI (#9798)
#9803 opened Jan 29, 2026 by SZhengP • Draft
4 of 17 tasks
1
5
update module: PERBASE Ready for Review
#9795 opened Jan 28, 2026 by camlloyd Loading…
3 of 17 tasks
1
5
Update CELLPOSE module to version 4.0.7 and adjust test configurations
#9793 opened Jan 28, 2026 by FloWuenne Loading…
6
Swap bwa/mem to topic and combine output channels size/l
#9783 opened Jan 27, 2026 by SPPearce Loading…
1
Add module stainwarpy/transformsegmask Ready for Review
#9778 opened Jan 26, 2026 by tckumarasekara Loading…
12 of 17 tasks
1
Add new module stainwarpy/register Ready for Review
#9777 opened Jan 26, 2026 by tckumarasekara Loading…
12 of 17 tasks
1
5
Add nextflow lint
#9726 opened Jan 21, 2026 by maxulysse Loading…
17 tasks
4
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704 opened Jan 20, 2026 by trianglegrrl • Draft
4 tasks done
5
Seqkit replace - fix #9647 and #9646
#9686 opened Jan 19, 2026 by ammaraziz Loading…
1
1
Update all deeptools conda environment YAML files to version 3.5.6
#9685 opened Jan 16, 2026 by bentyeh Loading…
2 of 17 tasks
7
Add ViralConsensus module
#9655 opened Jan 14, 2026 by lucaspatel Loading…
15 of 17 tasks
1
15
add nirvana
#9633 opened Jan 9, 2026 by FriederikeHanssen Loading…
17 tasks
8
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