Skip to content

Pull requests: nf-core/tools

New pull request New
37 Open 2,456 Closed
37 Open 2,456 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Migrate renovate config
#3726 opened Aug 26, 2025 by renovate bot Loading…
1
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading…
6
Ftr/test datasets easy copy
#3720 opened Aug 22, 2025 by JulianFlesch Loading…
4 tasks
@JulianFlesch
8
Update codecov/codecov-action digest to fdcc847
#3717 opened Aug 20, 2025 by renovate bot Loading…
1 task
2
Fix paths to logos
#3715 opened Aug 20, 2025 by maxulysse Loading…
4 tasks
2
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
Refactor download tests (#3634 follow up) download nf-core download
#3712 opened Aug 14, 2025 by ErikDanielsson Loading…
3 of 4 tasks
@ErikDanielsson
2
Add container load scripts for Docker and Podman (#3634 follow up) download nf-core download
#3706 opened Aug 8, 2025 by ErikDanielsson Loading…
3 of 4 tasks
@ErikDanielsson
2
TEMPLATE - add trainling slash for pipelines_testdata_base_path
#3701 opened Aug 5, 2025 by maxulysse Loading…
4 tasks
2
Move gather_registries function to ContainerFetcher subclasses (#3634 follow-up) download nf-core download
#3696 opened Jul 31, 2025 by ErikDanielsson Loading…
3 of 4 tasks
@ErikDanielsson
3
Testing out Reftrace for regex replacement in modules
#3695 opened Jul 30, 2025 by ningyuxin1999 • Draft
4 tasks
2
Automatically sync the Rocrate and README content during pipelines lint
#3688 opened Jul 28, 2025 by ningyuxin1999 Loading…
4 tasks
9
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Loading…
4 tasks
3.4.0
@edmundmiller
4
Update nf-test.yml
#3673 opened Jul 9, 2025 by maxulysse Loading…
4 tasks
8
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
10
Refactor pipeline downloads command to use nextflow inspect for container detection download nf-core download WIP Work in progress
#3634 opened Jun 23, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
159
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
4
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch Loading…
2 of 4 tasks
3.4.0
@JulianFlesch
76
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
5
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
43
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.4.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
ProTip! Exclude everything labeled bug with -label:bug.