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Commits on Jun 6, 2024

• fix ci (openproblems-bio#69)

  rcannood

  authored
  a623d3a

• Minor refactoring (openproblems-bio#68)

  Show description for 33a2752
  rcannood

  authored
  33a2752

Commits on Jun 4, 2024

• Update README.md

  rcannood

  authored
  503eb6d

• add back namespace (openproblems-bio#67)

  rcannood

  authored
  aaa0ca5

• Rename task-dge-perturbation-prediction to task_perturbation_prediction (openproblems-bio#66)

  Show description for 8a61381
  rcannood

  authored
  8a61381

• Attempt fixing the transformer_ensemble method (openproblems-bio#64)

  Show description for ca5de78
  rcannood

  authored
  ca5de78

• fix scripts (openproblems-bio#63)

  Show description for 9313317
  rcannood

  authored
  9313317

Commits on Jun 2, 2024

• reinterpret argument settings (openproblems-bio#62)

  Show description for a161cfd
  rcannood

  authored
  a161cfd

• Clean up metrics (openproblems-bio#59)

  Show description for 753f37c
  rcannood

  authored
  753f37c

• fix the bootstrapping component to align with what one expects from a bootstrapping method (openproblems-bio#61)

  rcannood

  authored
  02d3dff

Commits on Jun 1, 2024

• store original id (openproblems-bio#60)

  rcannood

  authored
  1dca6d5

• Implement alternate stability analysis (openproblems-bio#58)

  Show description for 408e292
  rcannood

  authored
  408e292

Commits on May 31, 2024

• Add clipping to layer (openproblems-bio#57)

  Show description for e8451aa
  rcannood

  authored
  e8451aa

• fix id map generator (openproblems-bio#56)

  rcannood

  authored
  3addfba

• Upgrade workflows (openproblems-bio#55)

  Show description for 1dcfdba
  rcannood

  authored
  1dcfdba

Commits on May 30, 2024

• warning on nas in prediction, error in test (openproblems-bio#54)

  rcannood

  authored
  a90f631

• fix fillna (openproblems-bio#53)

  rcannood

  authored
  7404b19

• Update_scripts (openproblems-bio#52)

  Show description for 22fc360
  

  rcannood

  and

  ttunja

  authored
  22fc360

Commits on May 29, 2024

• add cell obs to uns (openproblems-bio#51)

  Show description for 1f6afe2
  rcannood

  authored
  1f6afe2

Commits on May 25, 2024

• use non-adjusted p-values (openproblems-bio#50)

  szalata

  authored
  5934a85

Commits on May 24, 2024

• Add stability analysis (openproblems-bio#48)

  Show description for f022f27
  rcannood

  authored
  f022f27

Commits on May 23, 2024

• update threshold limits (openproblems-bio#49)

  szalata

  authored
  a312058

• Multiple fixes (openproblems-bio#47)

  Show description for 3650466
  rcannood

  authored
  3650466

Commits on May 22, 2024

• Clean up transformer ensemble (openproblems-bio#46)

  Show description for 022cf54
  rcannood

  authored
  022cf54

• add thresholded metrics (openproblems-bio#45)

  Show description for c501ebc
  szalata

  authored
  c501ebc

• Fix prime dimensions (openproblems-bio#44)

  Show description for baf9c73
  ttunja

  authored
  baf9c73

• Bump method requirements (openproblems-bio#43)

  Show description for c0fe3a5
  rcannood

  authored
  c0fe3a5

Commits on May 21, 2024

• fix typo in wf (openproblems-bio#42)

  rcannood

  authored
  449e07e

Commits on May 20, 2024

• add train_obs_zip to pyboost in wf (openproblems-bio#41)

  rcannood

  authored
  95eafa1

• Fix methods (openproblems-bio#40)

  Show description for d34d1a6
  rcannood

  authored
  d34d1a6

• Adding AmbrosM's solution to methods (openproblems-bio#31)

  Show description for 061da00
  

  andrew-benz

  and

  rcannood

  authored
  061da00

• move cell type checking to ahead of training with each drug (openproblems-bio#39)

  Show description for ca8854b
  

  3 peopleauthored
  ca8854b

Commits on May 19, 2024

• randomly select cell type if default does not exists (openproblems-bio#38)

  Show description for a6413da
  wangmengbo

  authored
  a6413da

Commits on May 18, 2024

• Update for unning code:lb2 (openproblems-bio#23)

  Show description for b4afd62
  

  HelloWorldLTY

  and

  rcannood

  authored
  b4afd62

• Multiple fixes to components (openproblems-bio#37)

  Show description for ba4429d
  rcannood

  authored
  ba4429d

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