fix id map generator (openproblems-bio#56)

Paulos2411 · May 31, 2024 · 3addfba · 3addfba
1 parent 1dcfdba
commit 3addfba
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/src/task/process_dataset/generate_id_map/script.py b/src/task/process_dataset/generate_id_map/script.py
@@ -8,12 +8,12 @@
 ## VIASH END
 
 print(">> Load dataset", flush=True)
-input_test = ad.read_h5ad(par["input_test"])
+de_test_h5ad = ad.read_h5ad(par["de_test_h5ad"])
 
 print(">> Generate id_map file", flush=True)
-id_map = input_test.obs[["sm_name", "cell_type"]]
+id_map = de_test_h5ad.obs[["sm_name", "cell_type"]]
 id_map.reset_index(drop=True, inplace=True)
 id_map.reset_index(names="id", inplace=True)
 
 print(">> Save data", flush=True)
-id_map.to_csv(par["output_id_map"], index=False)
+id_map.to_csv(par["id_map"], index=False)