add back namespace (openproblems-bio#67)

Paulos2411 · Jun 4, 2024 · aaa0ca5 · aaa0ca5
1 parent 8a61381
commit aaa0ca5
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diff --git a/src/process_dataset/add_uns_metadata/config.vsh.yaml b/src/process_dataset/add_uns_metadata/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: add_uns_metadata
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/bootstrap/config.vsh.yaml b/src/process_dataset/bootstrap/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: bootstrap
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/clean_pseudobulk/config.vsh.yaml b/src/process_dataset/clean_pseudobulk/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: filter_vars
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/compute_pseudobulk/config.vsh.yaml b/src/process_dataset/compute_pseudobulk/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: compute_pseudobulk
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/convert_h5ad_to_parquet/config.vsh.yaml b/src/process_dataset/convert_h5ad_to_parquet/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: convert_h5ad_to_parquet
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/convert_kaggle_h5ad_to_parquet/config.vsh.yaml b/src/process_dataset/convert_kaggle_h5ad_to_parquet/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: convert_kaggle_h5ad_to_parquet
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/filter_obs/config.vsh.yaml b/src/process_dataset/filter_obs/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: filter_obs
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/generate_id_map/config.vsh.yaml b/src/process_dataset/generate_id_map/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: generate_id_map
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info:

diff --git a/src/process_dataset/run_limma/config.vsh.yaml b/src/process_dataset/run_limma/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: run_limma
+  namespace: "process_dataset"
   info:
     type: process_dataset
     type_info: