Bump method requirements (openproblems-bio#43)

* increase max time * bump
Paulos2411 · May 22, 2024 · c0fe3a5 · c0fe3a5
1 parent 449e07e
commit c0fe3a5
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/_viash.yaml b/_viash.yaml
@@ -11,5 +11,5 @@ config_mods: |
   .platforms[.type == 'docker'].target_image_source := 'https://github.com/openproblems-bio/task-dge-perturbation-prediction'
   .platforms[.type == "nextflow"].directives.tag := "$id"
   .platforms[.type == "nextflow"].auto.simplifyOutput := false
-  .platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h" }
+  .platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
   .platforms[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"
diff --git a/src/common/nextflow_helpers/labels_tw.config b/src/common/nextflow_helpers/labels_tw.config
@@ -39,7 +39,7 @@ process {
     containerOptions = { workflow.containerEngine != 'singularity' ? "--shm-size ${String.format("%.0f",task.memory.mega * 0.25)}" : ""}
   }
   withLabel: gpu {
-    cpus: 8
+    cpus = 16
     accelerator = 1
     containerOptions = { workflow.containerEngine == "singularity" ? '--nv':
        ( workflow.containerEngine == "docker" ? '--gpus all': null ) }

diff --git a/src/task/methods/lstm_gru_cnn_ensemble/config.vsh.yaml b/src/task/methods/lstm_gru_cnn_ensemble/config.vsh.yaml
@@ -70,4 +70,4 @@ platforms:
   - type: native
   - type: nextflow
     directives:
-      label: [hightime,highmem,highcpu,highsharedmem,gpu]
+      label: [veryhightime,highmem,highcpu,highsharedmem,gpu]