Identify highly variables genes in scRNA-seq data using Bayesian inference.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Various utility functions for Seurat single-cell analysis

An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal

R package for integrating and analyzing multiple single-cell datasets

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.

Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space

The AnnSQL package enables SQL based queries on AnnData objects.

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems

Next-Gen Sequencing tools from the Horvath Lab

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Awesome GRN enhanced AnnData toolkit

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Single cell analysis using Low Resource