Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
python bioinformatics analysis clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-cycle cell-differentiation gene-expression-profiles analysis-pipeline cell-populations rna-seq-experiments cell-clusters
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Updated
Oct 23, 2025