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filter TCR, BCR, Ig from references before celltyping

Status: Open.

#94 In MangiolaLaboratory/HPCell;

· stemangiola opened on Apr 4, 2025

rename argument in empty_droplet_threshold function

Status: Open.

#93 In MangiolaLaboratory/HPCell;

· myushen opened on Mar 20, 2025

Generalise to arbitrary number of assays

Status: Open.

#92 In MangiolaLaboratory/HPCell;

· stemangiola opened on Dec 18, 2024

workspace_on_error starting message

Status: Open.

#88 In MangiolaLaboratory/HPCell;

· stemangiola opened on Dec 4, 2024

complete annotation consensus

Status: Open.

#80 In MangiolaLaboratory/HPCell;

· stemangiola opened on Sep 18, 2024

allow ellipse ... for every module to pass the arguments to the underlying methods

Status: Open.

#79 In MangiolaLaboratory/HPCell;

· stemangiola opened on Sep 18, 2024

Concern of mapping input genes with EnsDb.Hsapiens.v86

Status: Open.

#73 In MangiolaLaboratory/HPCell;

· myushen opened on Jul 30, 2024

Grammar feedback

Status: Open.

#66 In MangiolaLaboratory/HPCell;

· multimeric opened on Jul 1, 2024

Add dimensionality reduction report

Status: Open.

#59 In MangiolaLaboratory/HPCell;

· susansjy22 opened on May 28, 2024

Add microbulk to the pipeline

Status: Open.

#53 In MangiolaLaboratory/HPCell;

· stemangiola opened on Apr 10, 2024

Add Cellbender for removal of ambient RNA

Status: Open.

#20 In MangiolaLaboratory/HPCell;

· stemangiola opened on Aug 21, 2023

Add reporting

Status: Open.

#19 In MangiolaLaboratory/HPCell;

· stemangiola opened on Aug 21, 2023