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allow calculating llhs #349

Merged
merged 12 commits into from
Feb 27, 2020
Merged

allow calculating llhs #349

merged 12 commits into from
Feb 27, 2020

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yannikschaelte
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codecov bot commented Feb 27, 2020

Codecov Report

Merging #349 into develop will decrease coverage by 0.02%.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #349      +/-   ##
===========================================
- Coverage     76.8%   76.77%   -0.03%     
===========================================
  Files           23       23              
  Lines         2026     2024       -2     
  Branches       450      450              
===========================================
- Hits          1556     1554       -2     
  Misses         353      353              
  Partials       117      117
Impacted Files Coverage Δ
petab/calculate.py 89.14% <ø> (-0.17%) ⬇️

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@yannikschaelte yannikschaelte merged commit 8a63089 into develop Feb 27, 2020
@yannikschaelte yannikschaelte deleted the feature_llh2 branch February 27, 2020 21:56
@dweindl dweindl mentioned this pull request Feb 28, 2020
dweindl added a commit that referenced this pull request Feb 28, 2020
Release 0.1.3

File format:

* Updated documentation
* Observables table in YAML file now mandatory in schema (was implicitly 
  mandatory before, as observable table was required already)

Library:
* petablint:
  * Fix: allow specifying observables file via CLI (Closes #302)
  * Fix: nominalValue is optional unless estimated!=1 anywhere (Fixes #303)
  * Fix: handle undefined observables more gracefully (Closes #300) (#351)
* Parameter mapping: 
  * Fix / refactor parameter mapping (breaking change) (#344)
    (now performing parameter value and scale mapping together)
  * check optional measurement cols in mapping (#350)
* allow calculating llhs (#349), chi2 values (#348) and residuals (#345)
* Visualization
  * Basic Scatterplots & lot of bar plot fixes (#270)
  * Fix incorrect length of bool `bool_preequ` when subsetting with ind_meas 
    (Closes #322)
* make libcombine optional (#338)
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2 participants