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Commits on Aug 28, 2024

• Merge pull request #244 from paulmenzel/remove-superseded-sklearn

  Show description for 08d3c2e
  wheaton5

  authored
  08d3c2e

• souporcell_env.yaml: Remove *sklearn* provided already by *scikit-learn*

  Show description for 8aa6965
  paulmenzel

  committed
  8aa6965

Commits on Aug 20, 2024

• Update README.md

  wheaton5

  authored
  2081287

Commits on Aug 8, 2024

• Update README.md

  wheaton5

  authored
  4d6f9e2

Commits on Jul 25, 2024

• Update README.md

  wheaton5

  authored
  806da4f

Commits on Jun 6, 2024

• Merge pull request #227 from rezabehboudi/fix-pipeline-error

  Show description for 6111ff3
  wheaton5

  authored
  6111ff3

Commits on Apr 12, 2024

• updat readme for freebayes parameters. --max-coverage to --max-limit

  rezabehboudi

  committed
  1c368d6

• Update Singularity definition file. Fixed error by installing PyStan after downgrading to Python 3.10.

  rezabehboudi

  committed
  ceb372e

Commits on Oct 12, 2023

• remove -r for restarts because it conflicts with ref_matrix

  wheaton5

  committed
  af738b9

Commits on Sep 5, 2023

• params

  wheaton5

  committed
  54fd312

Commits on Jun 22, 2023

• cell tag option doesnt work, updated docs and made an assert

  wheaton5

  committed
  6872d88

• new singularity?

  wheaton5

  committed
  12f2cfd

• finally I have a new singularity build

  wheaton5

  committed
  f9443f1

• update stan version

  wheaton5

  committed
  55c16b4

Commits on Dec 14, 2022

• Merge pull request #162 from johnyaku/check-posteriors

  Show description for 9fb5271
  wheaton5

  authored
  9fb5271

Commits on Dec 12, 2022

• Add Dockerfile

  johnyaku

  committed
  f220d26

• Delete redundant line

  johnyaku

  committed
  c7a328b

• Restore doublet pair notation to original format

  johnyaku

  committed
  757d61a

Commits on Nov 25, 2022

• Include doublet pair in output; fix doublet columns

  johnyaku

  committed
  a3f024d

Commits on Nov 24, 2022

• Fix troublet column order for extra columns

  johnyaku

  committed
  f91f05d

• Output singlet and doublet posteriors

  johnyaku

  committed
  bbc8bbd

Commits on May 24, 2022

• Add files via upload

  wheaton5

  authored
  0b7ef0c

Commits on Mar 7, 2021

• Update souporcell_pipeline.py

  wheaton5

  authored
  1bd9f11

Commits on Mar 6, 2021

• Update README.md

  wheaton5

  authored
  38f9bb8

Commits on Mar 4, 2021

• porkchops

  wheaton5

  committed
  aefdb9b

Commits on Mar 3, 2021

• Update README.md

  wheaton5

  authored
  35b5bb5

Commits on Mar 2, 2021

• singularity build

  wheaton5

  committed
  790b281

Commits on Dec 17, 2020

• Update souporcell_pipeline.py

  wheaton5

  authored
  672d2bf

Commits on Nov 11, 2020

• Update README.md

  wheaton5

  authored
  bacd005

Commits on Oct 10, 2020

• Merge pull request #85 from gokceneraslan/patch-1

  Show description for cfafce5
  wheaton5

  authored
  cfafce5

• Make mkdir create parent dirs too

  gokceneraslan

  authored
  a9b76aa

Commits on Sep 10, 2020

• Update shared_samples.py

  wheaton5

  authored
  082ab3b

Commits on Sep 4, 2020

• Update README.md

  wheaton5

  authored
  34eade2

Commits on Sep 3, 2020

• fix freebayes threading

  wheaton5

  committed
  46c1617

Commits on Aug 26, 2020

• make vartrix execuable

  wheaton5

  committed
  3fb3dde

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