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Update souporcell_pipeline.py
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wheaton5 authored Mar 7, 2021
1 parent 38f9bb8 commit 1bd9f11
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2 changes: 1 addition & 1 deletion souporcell_pipeline.py
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import argparse

parser = argparse.ArgumentParser(
description="single cell RNAseq mixed genotype clustering using sparse mixture model clustering with tensorflow.")
description="single cell RNAseq mixed genotype clustering using sparse mixture model clustering.")
parser.add_argument("-i", "--bam", required = True, help = "cellranger bam")
parser.add_argument("-b", "--barcodes", required = True, help = "barcodes.tsv from cellranger")
parser.add_argument("-f", "--fasta", required = True, help = "reference fasta file")
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