Analyze your RNA sequencing data without writing a single line of code
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Single cell Nanopore sequencing data for Genotype and Phenotype
SNP-free RNA editing Identification Toolkit
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Automatic Packaging and Distribution of Bioinformatics Pipelines
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.
Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons
A small python tool for RNA-seq workflows
miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.
Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster
pySeqRNA: a python-based package for RNASeq data analysis
nimble — execute lightweight, flexible alignments on custom reference libraries
A snakemake RNAseq pipeline using kalisto. Adapted from https://github.com/crazyhottommy/RNA-seq-analysis/tree/master/RNA-seq-snakemake-pipeline
An Automatic System for RNA-Seq Data Analysis
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