Petra Bleeker laboratory
- 4 followers
- University of Amsterdam
- P.M.Bleeker@uva.nl
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Repositories
- PhenoFeatureFinder Public
A Python package dedicated to identifying plant metabolite features related to insect resistance
BleekerLab/PhenoFeatureFinder’s past year of commit activity - snakemake_rnaseq Public
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
BleekerLab/snakemake_rnaseq’s past year of commit activity - genotype_by_sequencing Public
A pipeline to call SNPs from RNA-seq data and plot it along chromosomal coordinates
BleekerLab/genotype_by_sequencing’s past year of commit activity - shiny_rnaseq_app Public
An Shiny application to explore RNA-seq results produced from the laboratory on tomato. Web application is private under password protection (please request access).
BleekerLab/shiny_rnaseq_app’s past year of commit activity - small-rna-seq-pipeline Public
A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data
BleekerLab/small-rna-seq-pipeline’s past year of commit activity - random_forest_with_ranger Public archive
An Rscript wrapper around the MUVR package of R. Contains a Docker image to ensure portability of the R script.
BleekerLab/random_forest_with_ranger’s past year of commit activity - freebayes_snp_calling Public
A Snakemake pipeline to call variants (SNPs, InDels) from DNA-seq Illumina fastq files.
BleekerLab/freebayes_snp_calling’s past year of commit activity - natural-insecticides-thrips-whiteflies Public archive
Data and figures for the natural insecticides paper
BleekerLab/natural-insecticides-thrips-whiteflies’s past year of commit activity
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