Package for fetching metadata and downloading data from SRA/ENA/GEO

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

Extract metadata from biosamples in NCBI

ARA.v1.6.0

A tool to prepare files and run/monitor programmatic submissions to NCBI

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

HULK is a fully automated, containerized pipeline for processing bulk RNA-seq data directly from SRA accessions

fast utils for fetch and dump NCBI SRA archive raw data

Data and code used in the Plant Genomes dashboard

frequency of high level ranks in sequence databases

Pulls Metadata from NCBI based on Sample name or SRR #

The Docker integration for the r2g project.

A command-line tool for retrieving annotations from the NCBI SRA.

R client for accessing the omicidx database

Understanding the NCBI SRA Validator AI Think of this application as a Flight Simulator for DNA Data designed to optimize cloud operations for the world's largest biological databases. The Federal Ecosystem: NIH, NLM, and NCBI The National Institutes of Health (NIH) is the primary U.S. federal agency for medical research.