Fast Bayesian Hidden Markov Model with Wavelet Compression

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

A universal telomere annotation tool for genome assemblies in [.fa][.gz] format

A multithreaded tool for maximal exact matches (MEM) computation (in genomes).

Identification of organisms from a stream of DNA sequences

Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms

ECE358 Exercise - Finding Maximal Matches in Genome Sequences

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

a genome alignment library built around seed-and-extend algorithms for maximal exact and unique matches

Common bioinformatic tools in C/C++

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.