[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

DNA processing and manipulating for PHP 8.3

fast and comprehensive k-mer counting package

Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.

A library for reading and writing DNA test kit files in PHP.

Package to parse DNA kit files, and import them into Laravel

This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Various utilities for working with FASTA nucleotide sequences

Small school project to convert from DNA to mRNA to proteins using C++

DNAc is a programming language for DNAs.

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data

R package for estimating copy-number variation from targeted DNA sequencing

DNA sequences manipulation and analysis. Released on 2018.

HCAT CLI is a command line interface tool to analyze DNA sequence data.

Miscellaneous Scripts in Bioinformatics

Repository that has the standard DNA, RNA and Protein Objects and the standard methods to interact with them.