Estimating k-mer coverage histogram of genomics data
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Updated
Dec 13, 2023 - C++
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k-mer-frequency
Here are 5 public repositories matching this topic...
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
python
diversity
plotly
protein
dask
fastq
k-mer-counting
k-mer-frequency
divideandconquer
metagenomic-analysis
metatranscriptomic-analysis
kmer-frequency-count
nucleotides
diversity-estimation
database-independent-analysis
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Updated
Nov 30, 2022 - Python
Python bioinformatics CLI for k-mer counts and de Bruijn graphs
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Updated
Oct 12, 2024 - Python
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
python
diversity
plotly
protein
dask
fastq
k-mer-counting
k-mer-frequency
divideandconquer
metagenomic-analysis
metatranscriptomic-analysis
kmer-frequency-count
nucleotides
diversity-estimation
database-independent-analysis
multiomics
multiomics-data
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Updated
Jun 12, 2024 - HTML
PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.
smith-waterman
k-mer
k-mer-frequency
k-mer-hashing
genome-analysis
bwa-mem
metagenomic-analysis
blastn
sratoolkit
genome-alignment
dna-processing
environment-sampling
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Updated
Oct 18, 2024 - C++
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