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k-mer-hashing

Here are 4 public repositories matching this topic...

bcgsc / ntHash

Fast hash function for DNA/RNA sequences

bioinformatics genomics bloom-filter hash hash-algorithm hash-methods k-mer-hashing

Updated Apr 15, 2024
C++

luizirber / nthash

ntHash implementation in Rust

bioinformatics genomics hash-functions hash-algorithm hash-methods k-mer-hashing

Updated Jul 12, 2024
Rust

MatthewRalston / kmerdb

Python bioinformatics CLI for k-mer counts and de Bruijn graphs

bioinformatics python-cli k-mer k-mer-counting k-mer-frequency k-mer-hashing bgzf

Updated Oct 12, 2024
Python

Morteza1814 / PARMIK

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

smith-waterman k-mer k-mer-frequency k-mer-hashing genome-analysis bwa-mem metagenomic-analysis blastn sratoolkit genome-alignment dna-processing environment-sampling

Updated Oct 18, 2024
C++

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