Telescope#9948

Open

hanalysis wants to merge 43 commits intonf-core:masterfrom

hanalysis:telescope

Commits on Nov 19, 2025

adding tetranscripts module
Hannah Jones
committed

Commits on Dec 2, 2025

Updating test files and correcting command typo
Hannah Jones
committed
Successful singularity run test
Hannah Jones
committed

Commits on Dec 30, 2025

Adding multiple files to test - wip
Hannah Jones
committed

Commits on Jan 2, 2026

First effort to include multiple .bam
Hannah Jones
committed
Multiple .bam processing add
Hannah Jones
committed

Commits on Jan 6, 2026

Amending to test data
Hannah Jones
committed
Add --sortByPos to config for test
Hannah Jones
committed

Commits on Jan 7, 2026

Adding config to add parameters for test bams
Hannah Jones
committed
Trying locally
Hannah Jones
committed
Main working but stub failing with test data
Hannah Jones
committed
Public data working main test and stub
Hannah Jones
committed
Fixing linting!
Hannah Jones
committed
Still linting
Hannah Jones
committed

Commits on Jan 8, 2026

Linted and test passing public data - no .bai
Hannah Jones
committed
WIP adding optional .bai
Hannah Jones
committed
WIP migrating to new syntax
Hannah Jones
committed
WIP
Hannah Jones
committed
WIP - output
Hannah Jones
committed

Commits on Feb 2, 2026

boilerplate files for telescope
Hannah Jones
committed
add docker container, remove conda
hanalysis
committed

Commits on Feb 3, 2026

Commits on Feb 4, 2026

Adding test snapshot
Hannah Jones
committed
Merge remote-tracking branch 'upstream/master' into telescope
Hannah Jones
committed
modules/nf-core/telescope/assign/main.nf
Hannah Jones
committed
Adding config to allow compatibility with tetranscripts gtf
Hannah Jones
committed
Fixing issues w testing
Hannah Jones
committed
Working with test
Hannah Jones
committed

Commits on Feb 5, 2026

Updating to improve test
Hannah Jones
committed
adding test parameter
hanalysis
committed
Improving test
Hannah Jones
committed

Commits on Feb 6, 2026

Test passing snapshot unstable
Hannah Jones
committed
Passing test
Hannah Jones
committed

Commits on Feb 9, 2026

Adding environment.yml
Hannah Jones
committed
Update meta.yml
hanalysis
committed
Passing test, version issue only
Hannah Jones
committed
Passing tests and linting w just versions warnings
Hannah Jones
committed
[automated] Fix linting with Prettier
nf-core-bot
committed
Update modules/nf-core/telescope/assign/tests/main.nf.test

hanalysis
and
mashehu
authored
Update .vscode/settings.json

hanalysis
and
mashehu
authored
Update modules/nf-core/telescope/assign/tests/main.nf.test

hanalysis
and
mashehu
authored
Adding topics to fix github linter
hanalysis
committed