Skip to content

PEtab v0.1.0
Compare
Choose a tag to compare
@dweindl dweindl released this 29 Jan 19:22
v0.1.0
78924fb
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.

Data format:

  • Introduce observables table instead of SBML assignment rules for defining
    observation model (#244) (moves observableTransformation and noiseModel
    from the measurement table to the observables table)
  • Allow initial concentrations / sizes in condition table (#238)
  • Fixes and clarifications in the format documentation
  • Changes in prior columns of the parameter table (#222)
  • Introduced separate version number of file format, this release being
    version 1

Library:

  • Adaptations to new file formats
  • Various bugfixes and clean-up, especially in visualization and validator
  • Parameter mapping changed to include all model parameters and not only
    those differing from the ones defined inside the SBML model
  • Introduced constants for all field names and string options, replacing
    most string literals in the code (#228)
  • Added unit tests and additional format validation steps
  • Optional parallelization of parameter mapping (#205)
  • Extended documentation (in-source and example Jupyter notebooks)
Assets 2
Loading