Update prior definitions; add checks #222
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@@ Coverage Diff @@
## develop #222 +/- ##
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- Coverage 71.91% 71.6% -0.32%
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Files 18 18
Lines 1517 1331 -186
Branches 377 302 -75
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- Hits 1091 953 -138
+ Misses 361 322 -39
+ Partials 65 56 -9
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note: a check on the priorType column was added, but priorParameters is not checked yet. |
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currently, we write e.g. |
done |
Release 0.1.0 Data format: * Introduce observables table instead of SBML assignment rules for defining observation model (#244) (moves observableTransformation and noiseModel from the measurement table to the observables table) * Allow initial concentrations / sizes in condition table (#238) * Fixes and clarifications in the format documentation * Changes in prior columns of the parameter table (#222) * Introduced separate version number of file format, this release being version 1 Library: * Adaptations to new file formats * Various bugfixes and clean-up, especially in visualization and validator * Parameter mapping changed to include all model parameters and not only those differing from the ones defined inside the SBML model * Introduced constants for all field names and string options, replacing most string literals in the code (#228) * Added unit tests and additional format validation steps * Optional parallelization of parameter mapping (#205) * Extended documentation (in-source and example Jupyter notebooks)
Fixes #218